BioUML
From LipidomicsWiki
Contents |
Information and Documentation about BioUML - Software
BioUML plugin for EndoNet
In a cooperation between ISB and Goettingen a plugin for EndoNet is developed. You can access the server providing the plugin when you load a new database in your client and use the following settings:
- Server address: 134.76.74.100
- Server port: 8180
At the moment this is only a test version of the plugin, new versions with more functionality, like diagrams will come soon.
2009
Plans for future
- Introduction (main features)
- Broader database linkage
- Responsiveness
- User interface
- Simulations
- Microarray
- Statistical analyzes
- Automated pathway creation
- Automated software update manager
Improvements
- More stability
- Inclusion of databases like KEGG/GO/Ensembl/GeneNet ...
- Different graphic options
Requirements and Suggestions
- Provide user manual for pathway creation
- Specify KEGG pathway names (e.g. glycolysis instead of map00010)
- Compatibility of KEGG pathways and self-designed pathways
- Optimize search options (e.g. search for lysophosphatidylcholine does not provide any lipid results)
2008
Plans for future
- Responsiveness
- Broad database linkage
- User-friendly -> Quick introduction in program application
- Automated pathway creation
- Automated software update manager (like Eclipse's find and install)
Requirements and Suggestions
Different graphics
- not too colourful (arrows, symbols)
- all ankles in 90°C (see KEGG pathway)
- shorter names for enzymes (e.g. EC number in KEGG pathway)
More stability
No program crashes during usage of more than one person
