Ganglioside extraction
From LipidomicsWiki
Description
- liquid-liquid extraction using chloroform
Protocol
- aqueous samples are used for lipid extraction including cell homogenates, homogenized tissue, plasma
- to 0.8 volume parts aqueous sample 2 parts of methanol and subsequently 1 part of chloroform are added to give one phase (C:M:W=1:2:0.8)
- the mixture is left for an hour at room temperature with periodical vortexing
- if gangliosides are needed, the one phasic solution is divided into two parts; one part is partitioned according to the modified Folch method
- to the other part 1.2 parts of water is added for phase separation (final composition C:M:W=1:2:2 v/v/v)
- after vortexing the sample is centrifuged at 2000 rpm for 20 min
- the upper aqueous phase is separated
- the lower chloroform phase is reextracted with theoretical upper phase
- the combined upper phases are loaded onto a C18 SPE column after adjusting the KCl concentration to 0.1M
- gangliosides are eluted with methanol, evaporated and redissolved in 50 uL C-M=1:1